Publications | Nebraska Center for Biotechnology

Publication Acknowledgement

Visit the Nebraska Center for Biotechnology's acknowledgment page for detailed guidance on when, why, and how to provide acknowledgment in publications. We also strongly recommend contacting us before submitting any publications to request a detailed description of the methodology used to include in the Method section.

We thank the Proteomics & Metabolomics Facility (RRID:SCR_021314), Nebraska Center for Biotechnology at the University of Nebraska-Lincoln for the mass spectrometry analysis. The facility and instrumentation are supported by the Nebraska Research Initiative.

Publication List

Below are the publications which our facility provided collaboration or assistance on through the services that our facility offers. For a full list of publications co-authored by individuals on our team, see the personnel page.

2024

Dahal S, Alvarez S, Balboa SJ, Hicks LM, Rojas CM. Defining the secondary metabolites in the Pseudomonas protegens PBL3 secretome with antagonistic activity against Burkholderia glumae. Phytopathology. 2024 Sep 5. 10.1094/PHYTO-04-24-0140-R. Epub ahead of print. PubMed PMID: 39235863.

Upadhyaya B, Moreau R, Majumder K. Antioxidant and Anti-Inflammatory Capacities of Three Dry Bean Varieties after Cooking and In Vitro Gastrointestinal Digestion. J Agric Food Chem. 2024 Aug 21;72(33):18445-18454. Epub 2024 Aug 7. PubMed PMID: 39110605.

Batt MC, Venzor LG, Gardner K, Reith RR, Roberts KA, Herrera NJ, Fuller AM, Sullivan GA, Mulliniks JT, Spangler ML, Valberg SJ, Steffen DJ, Petersen JL. An autosomal recessive variant in PYGM causes myophosphorylase deficiency in Red Angus composite cattle. BMC Genomics. 2024 Apr 27;25(1):417. PubMed PMID: 38678201.

Vijayan J, Alvarez S, Naldrett MJ, Morse W, Maliva A, Wase N, Riekhof WR. Nitrogen starvation leads to TOR kinase-mediated downregulation of fatty acid synthesis in the algae Chlorella sorokiniana and Chlamydomonas reinhardtii. BMC Plant Biol. 2024 Aug 6;24(1):753. PubMed PMID: 39107711

Acevedo FE. The Spotted Lanternfly Contains High Concentrations of Plant Hormones in its Salivary Glands: Implications in Host Plant Interactions. J Chem Ecol. 2024 Aug 13. Epub ahead of print. PubMed PMID: 39138763.

Prado-Fernández MF, Magdaleno-Madrigal VM, Cabañas-García E, Mucio-Ramírez S, Almazán-Alvarado S, Pérez-Molphe-Balch E, Gómez-Aguirre YA, Sánchez-Jaramillo E. Pereskia sacharosa Griseb. (Cactaceae) Prevents Lipopolysaccharide-Induced Neuroinflammation in Rodents via Down-Regulating TLR4/CD14 Pathway and GABAA γ2 Activity. Current Issues in Molecular Biology. 2024; 46(7):6885-6902. Link to Article.

Sharma S, Naldrett MJ, Gill MJ, Checco JW. Affinity-Driven Aryl Diazonium Labeling of Peptide Receptors on Living Cells. J Am Chem Soc. 2024 May 15;146(19):13676-13688. PubMed PMID: 38693710.

Andrabi SM, Shahriar SMS, Al-Gahmi AM, Wilczewski BL, Carlson MA, Xie J. Injectable and rapidly expandable thrombin-decorated cryogels achieve rapid hemostasis and high survival rates in a swine model of lethal junctional hemorrhage. Bioact Mater. 2024 Apr 30;38:154-168. PubMed PMID: 38721595.

Barboza Bispo R, Teixeira do Amaral A Junior, Pinto VB, de Oliveira Santos T, Jário de Lima V, Rohem Simão B, Fischer A, Naldrett MJ, Alvarez S. Unraveling the Mechanisms of Efficient Phosphorus Utilization in Popcorn (Zea mays L. var. everta): Insights from Proteomic and Metabolite Analysis. J Proteome Res. 2024 Apr 22. PubMed PMID: 38648199.

Johannsen S, Gierse RM, Krüger A, Edwards RL, Nanna V, Fontana A, Zhu D, Masini T, de Carvalho LP, Poizat M, Kieftenbelt B, Hodge DM, Alvarez S, Bunt D, Lacour A, Shams A, Meissner KA, de Souza EE, Dröge M, van Vliet B, den Hartog J, Hutter MC, Held J, Odom John AR, Wrenger C, Hirsch AKH. High Target Homology Does Not Guarantee Inhibition: Aminothiazoles Emerge as Inhibitors of Plasmodium falciparum. ACS Infect Dis. 2024 Mar 8;10(3):1000-1022. PubMed PMID: 38367280.

Xu R, Beatty WL, Greigert V, Witola WH, Sibley LD. Multiple pathways for glucose phosphate transport and utilization support growth of Cryptosporidium parvum. Nat Commun. 2024 Jan 9;15(1):380. PubMed PMID: 38191884.

Rinkenberger N, Rosenberg A, Radke JB, Bhushan J, Tomita T, Weiss LM, Sibley LD. Susceptibility of Toxoplasma gondii to autophagy in human cells relies on multiple interacting parasite loci. mBio. 2024 Jan 16;15(1):e0259523. PubMed PMID: 38095418.

Hayer SS, Conrin M, French JA, Benson AK, Alvarez S, Cooper K, Fischer A, Alsafwani ZW, Gasper W, Suhr Van Haute MJ, Hassenstab HR, Azadmanesh S, Briardy M, Gerbers S, Jabenis A, Thompson JL, Clayton JB. Antibiotic-induced gut dysbiosis elicits gut-brain axis relevant multi-omic signatures and behavioral and neuroendocrine changes in a nonhuman primate model. Gut Microbes. 2024 Jan- Dec;16(1):2305476. PubMed PMID: 38284649.

Nolasco E, Baraka E, Yang J, Ciftci ON, Majumder K. In-vitro bio- accessibility and antioxidant activity of commercial standard and enriched whole egg compounds influenced by production and domestic cooking practices. Food Chem. 2024 Jan 1;430:136948. PubMed PMID: 37542967.

2023

Hao J, Yang Y, Futrell S, Kelly EA, Lorts CM, Nebie B, Runo S, Yang J, Alvarez SA, Lasky JR, Schachtman DP. CRISPR/Cas9-mediated mutagenesis of carotenoid cleavage dioxygenase (CCD) genes in sorghum alters strigolactone biosynthesis and plant biotic interactions. Phytobiomes J. 2023 7:3, 339-351. PubMed PMID: 29614837.

Olanrewaju GO, Haveman NJ, Naldrett MJ, Paul AL, Ferl RJ, Wyatt SE. Integrative transcriptomics and proteomics profiling of Arabidopsis thaliana elucidates novel mechanisms underlying spaceflight adaptation. Front Plant Sci. 2023 Nov 27;14:1260429. PubMed PMID: 38089794.

Ogbu CP, Kapoor S, Vecchio AJ. Structural basis of Clostridium perfringens enterotoxin activation and oligomerization by trypsin. Toxins (Basel). 22023 Oct 31;15(11):637. PubMed PMID: 37999500.

Liu B, Nguyen PL, Yu H, Li X, Wang H, Price J, Niu M, Guda C, Cheng X, Sun X, Moreau R, Ramer-Tait A, Naldrett MJ, Alvarez S, Yu J. Critical contributions of protein cargos to the functions of macrophage-derived extracellular vesicles. Nanobiotechnology. 2023 Sep 28;21(1):352. PubMed PMID: 37770932.

Palmer NA, Alvarez S, Naldrett MJ, Muhle A, Sarath G, Edmé SJ, Tatineni S, Mitchell RB, Yuen G. Dynamic reconfiguration of switchgrass proteomes in response to rust (Puccinia novopanici) infection. Int J Mol Sci. 2023 Sep 27;24(19):14630. PubMed PMID: 37834079.

Can H, Chanumolu SK, Nielsen BD, Alvarez S, Naldrett MJ, Ünlü G, Otu HH. Integration of meta-multi-omics data using probabilistic graphs and external knowledge. Cells. 2023 Aug 4;12(15):1998. PubMed PMID: 37566077.

Hao G, Naumann TA, Chen H, Bai G, McCormick S, Kim H, Tian B, Trick HN, Naldrett MJ, Proctor R. Fusarium graminearum effector FgNls1 targets plant nuclei to induce wheat head blight. Mol Plant Microbe Interact. Aug;36(8):478-488. PubMed PMID: 36853197.

Matthes, M. S., Best, N. B., Robil, J. M., & McSteen, P. Enhancement of developmental defects in the boron-deficient maize mutant tassel-less1 by reduced auxin levels. J Plant Nutr Soil Sci. 2023; 00, 1–10. Link to Article.

Li G, Gong Z, Dulal N, Marroquin-Guzman M, Rocha RO, Richter M, Wilson RA. A protein kinase coordinates cycles of autophagy and glutaminolysis in invasive hyphae of the fungus Magnaporthe oryzae within rice cells. Nat Commun. 2023 Jul 12;14(1):4146. PubMed PMID: 37438395.

Heinis FI, Alvarez S, Andrews MT. Mass spectrometry of the white adipose metabolome in a hibernating mammal reveals seasonal changes in alternate fuels and carnitine derivatives. Front Physiol. 2023 Jun 28;14:1214087. PubMed PMID: 37449012.

Newton A, Majumder K. Germination and simulated gastrointestinal digestion of chickpea (Cicer arietinum L.) in exhibiting in vitro antioxidant activity in gastrointestinal epithelial cells. Antioxidants (Basel). 2023 May 18;12(5):1114. PubMed PMID: 37237980.

Palmer NA, Sarath G, Bowman MJ, Saathoff AJ, Edmé SJ, Mitchell RB, Tobias CM, Madhavan S, Scully ED, Sattler SE. Divergent metabolic changes in rhizomes of lowland and upland switchgrass (Panicum virgatum) from early season through dormancy onset. Plants (Basel). 2023 Apr 21;12(8):1732. PubMed PMID: 37111955.

Dunigan DD, Agarkova IV, Esmael A, Alvarez S, Van Etten JL. Early-phase drive to the precursor pool: Chloroviruses dive into the deep end of nucleotide metabolism. Viruses. 2023 Mar 31;15(4):911. PubMed PMID: 37112891.

Lopes LD, Futrell SL, Bergmeyer E, Hao J, Schachtman DP. Root exudate concentrations of indole-3-acetic acid (IAA) and abscisic acid (ABA) affect maize rhizobacterial communities at specific developmental stages. FEMS Microbiol Ecol. 2023 Feb 28;99(3):fiad019. PubMed PMID: 36861302.

Akey ME, Xu R, Ravindran S, Funkhouser-Jones L, Sibley LD. Apical secretory glycoprotein complex contributes to cell attachment and entry by Cryptosporidium parvum. mBio. 2023 Feb 28;14(1):e0306422. PubMed PMID: 36722968.

2022

Nguyen THD, Vu DC, Alvarez S, Nguyen KD, Nguyen TLT, Tuan NN, Minh-Nguyet NT, Tam LN, Ho TL, Vo XT. Comparative examination of phytonutrients and antioxidant activity of commonly consumed nuts and seeds grown in Vietnam. Horticulturae. 2022; 8(6):521. Link to Abstract.

Zhang B, Lewis JA, Vermerris W, Sattler SE, Kang C. A sorghum ascorbate peroxidase with four binding sites has activity against ascorbate and phenylpropanoids. Plant Physiol. 2022 Dec 28:kiac604. PubMed PMID: 36575825.

Sun G, Wase N, Shu S, Jenkins J, Zhou B, Torres-Rodríguez JV, Chen C, Sandor L, Plott C, Yoshinga Y, Daum C, Qi P, Barry K, Lipzen A, Berry L, Pedersen C, Gottilla T, Foltz A, Yu H, O'Malley R, Zhang C, Devos KM, Sigmon B, Yu B, Obata T, Schmutz J, Schnable JC. Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass. Nat Commun. 2022 Dec 13;13(1):7731. PubMed PMID: 36513676.

He X, Gao T, Chen Y, Liu K, Guo J, Niu W. Genetic code expansion in Pseudomonas putida KT2440. ACS Synth Biol. 2022 Nov 18;11(11):3724-3732. PubMed PMID: 36287825.

Ashkarran AA, Gharibi H, Voke E, Landry MP, Saei AA, Mahmoudi M. Measurements of heterogeneity in proteomics analysis of the nanoparticle protein corona across core facilities. Nat Commun. 2022 Nov 3;13(1):6610. PubMed PMID: 36329043.

Grzybowski MW, Zwiener M, Jin H, Wijewardane NK, Atefi A, Naldrett MJ, Alvarez S, Ge Y, Schnable JC. Variation in morpho-physiological and metabolic responses to low nitrogen stress across the sorghum association panel. BMC Plant Biol. 2022 Sep 9;22(1):433. PubMed PMID: 36076172.

Grover S, Cardona JB, Zogli P, Alvarez S, Naldrett MJ, Sattler SE, Louis J. Reprogramming of sorghum proteome in response to sugarcane aphid infestation. Plant Sci. 2022 Jul;320:111289. PubMed PMID: 35643611.

Lou X, Xiong J, Tian H, Yu H, Chen C, Huang J, Yuan H, Hanna M, Yuan L, Xu H. Effect of high-pressure processing on the bioaccessibility of phenolic compounds from cloudy hawthorn berry (Crataegus pinnatifida) juice. J Food Compost Anal. 2022 Jul;110. Link to Article.

Ray S, Chee L, Zhou Y, Schaefer MA, Naldrett MJ, Alvarez S, Woods NT, Hewitt KJ. Functional requirements for a Samd14-capping protein complex in stress erythropoiesis. Elife. 2022 Jun 17;11:e76497. PubMed PMID: 35713400.

Wang P, Lopes LD, Lopez-Guerrero MG, van Dijk K, Alvarez S, Riethoven JJ, Schachtman DP. Natural variation in root exudation of GABA and DIMBOA impacts the maize root endosphere and rhizosphere microbiomes. J Exp Bot. 2022 May 11;erac202. PubMed PMID: 35552399.

Matthes MS, Darnell Z, Best NB, Guthrie K, Robil JM, Amstutz J, Durbak A, McSteen P. Defects in meristem maintenance, cell division, and cytokinin signaling are early responses in the boron deficient maize mutant tassel-less1. Physiol Plant. 2022 Mar;174(2):e13670. PubMed PMID: 35292977.

Moss WJ, Patterson CE, Jochmans AK, Brown KM. Functional analysis of the expanded phosphodiesterase gene family in Toxoplasma gondii tachyzoites. mSphere. 2022 Feb 23:7(1):e0079321. PubMed PMID: 35107337.

Grover S, Puri H, Xin Z, Sattler S, Louis J. Dichotomous role of jasmonic acid in modulating sorghum defense against aphids. Mol Plant-Microbe Interact. 2022:Online ahead of print. PubMed PMID: 35394339.

Lopez-Guerrero MG, Wang P, Phares F, Schachtman DP, Alvarez S, Van Dijk K. A glass bead semi-hydroponic system for intact maize root exudate analysis and phenotyping. Plant Methods. 2022;18(25). PubMed PMID: 35246193.

Moss WJ, Patterson CE, Jochmans AK, Brown KM. Functional analysis of the expanded phosphodiesterase gene family in Toxoplasma gondii tachyzoites. Mol Cell Biol. 2022;7(1). PubMed PMID: 35107337.

Polyanskaya SA, Moreno RY, Lu B, Feng R, Yao Y, Irani S, Klingbeil O, Yang Z, Wei Y, Demerdash OE, Benjamin LA, Weiss MJ, Zhang YJ, Vokac CR. SCP4-STK35/PDIK1L complex is a dual phospho-catalytic signaling dependency in acute myeloid leukemia. Cell Reports. 2022;38(2). PubMed PMID: 35021089.

2021

Nolasco E, Naldrett MJ, Alvarez S, Johnson PE, Majumder K. Bioactivity of cooked standard and enriched whole eggs from White Leghorn and Rhode Island Red in exhibiting in-vitro antioxidant and ACE-inhibitory effects. Nutrients. 2021;13(12):4232. Link to Article.

Bandyopadhyay M, Guha S, Naldrett MJ, Alvarez S, Majumder K. Evaluating the effect of high-pressure processing in contrast to boiling on the antioxidant activity from alcalase hydrolysate of Great Northern Beans (Phaseolus vulgaris). J Food Biochem. 2021 Nov 18:e14004. PubMed PMID: 34792196.

Vu DC, Alvarez S. Phenolic, carotenoid and saccharide compositions of Vietnamese Camellia sinensis teas and herbal teas. Molecules. 2021,26(21):6496. Link to Article.

Liu B, Li X, Yu H, Shi X, Zhou Y, Alvarez S, Naldrett MJ, Kachman SD, Ro SH, Sun X, Chung S, Jing L, Yu J. Therapeutic potential of garlic chive-derived vesicle-like nanoparticles in NLRP3 inflammasome-mediated inflammatory diseases. Theranostics. 2021;11(19):9311-30. PubMed PMID: 34646372.

Vu DC, Vu QT, Huynh L, Lin C-H, Alvarez S, Vo XT, Nguyen THD. Evaluation of fatty acids, phenolics and bioactivities of spent coffee grounds prepared from Vietnamese coffee. Int J Food Prop. 2021,24:1,1548-58. Link to Article.

Rosenberg A, Sibley LD. Toxoplasma gondii secreted effectors co-opt host repressor complexes to inhibit necroptosis. Cell Host Microbe. 2021 Jul 14;29(7):1186-1198.e8. PubMed PMID: 34043960.

Wang X, Fu Y, Deatty WL, Ma M, Brown A, Sibley LD, Zhang R. Cryo-EM structure of cortical microtubules from human parasite Toxoplasma gondii identifies their microtubule inner proteins. Nature Comm. 2021 May 24;12:3065. PubMed PMID: 34031406.

Alvarez S, Naldrett MJ. Mass spectrometry based untargeted metabolomics for plant systems biology. Emerg Top Life Sci. 2021 May 21;5(2):189-201. PubMed PMID: 33704399.

Nolasco E, Yang J, Ciftci O, Vu DC, Alvarez S, Purdum S, Majumder K. Evaluating the effect of cooking and gastrointestinal digestion in modulating the bio-accessibility of different bioactive compounds of eggs. Food Chem. 2021 May 15;344:128623. PubMed PMID:33221100.

Guha S, Alvarez S, Majumder K. Transport of Dietary Anti-Inflammatory Peptide, γ-Glutamyl Valine (γ-EV), across the Intestinal Caco-2 Monolayer. Nutrients. 2021 Apr 24;13(5):1448. PubMed PMID: 33923345.

King HM, Rana S, Kubica SP, Mallareddy JR, Kizhake S, Ezell EL, Zahid M, Naldrett MJ, Alvarez S, Law HC, Woods NT, Natarajan A. Aminopyrazole based CDK9 PROTAC sensitizes pancreatic cancer cells to venetoclax. Bioorg Med Chem Lett. 2021 Apr 23;43:128061. PubMed PMID: 33895280.

Liu E, Segato F, Wilkins MR. Fed-batch production of Thermothelomyces thermophilus lignin peroxidase using a recombinant Aspergillus nidulans strain in stirred-tank bioreactor. Bioresour Technol. 2021 Apr;325. PubMed PMID: 33461124.

Casey CA, Donohue TM Jr, Kubik JL, Kumar V, Naldrett MJ, Woods NT, Frisbie CP, McNiven MA, Thomes PG. Lipid droplet membrane proteome remodeling parallels ethanol-induced hepatic steatosis and its resolution. J Lipid Res. 2021 Feb 20;62:100049. PubMed PMID: 33617872.

Chen X, Liu B, Li X, An TT, Zhou Y, Li G, Wu-Smart J, Alvarez S, Naldrett MJ, Eudy J, Kubik G, Wilson RA, Kachman SD, Cui J, Yu J. Identification of anti-inflammatory vesicle-like nanoparticles in honey. J Extracell Vesicles. 2021 Feb;10(4):e12069. PubMed PMID: 33613874.

2020

Rao PS, Nolasco E, Handa A,Naldrett MJ, Alvarez S, Majumder K. Effect of pH and Heat Treatment on the Antioxidant Activity of Egg White Protein-Derived Peptides after Simulated In-Vitro Gastrointestinal Digestion. Antioxidants (Basel). 2020 Nov 11;9(11):1114. PubMed PMID: 33187320.

Liu E, Wilkins MR. Process optimization and scale-up production of fungal aryl alcohol oxidase from genetically modified Aspergillus nidulans in stirred-tank bioreactor. Bioresour Technol. 2020 Nov;315. PubMed PMID: 32659422.

Pingault L, Palmer NA, Koch KG, Heng-Moss T, Bradshaw JD, Seravalli J, Twigg P, Louis J, Sarath G. Differential defense responses of upland and lowland switchgrass cultivars to a cereal aphid pest. Int J Mol Sci. 2020 Oct 27;21(21):7966. PubMed PMID: 33120946.

Grover S, Agpawa E, Sarath G, Sattler SE, Louis J. Interplay of phytohormones facilitate sorghum tolerance to aphids. Plant Mol Biol. 2020 Oct 15. PubMed PMID: 33063221.

Jia S, Yobi A, Naldrett MJ, Alvarez S, Angelovici R, Zhang C, Holding DR. Deletion of maize RDM4 suggests a role in endosperm maturation as well as vegetative and stress-responsive growth. J Exp Bot. 2020 Oct 7;71(19):5880-5895. PubMed PMID: 32667993.

Zogli P, Alvarez S, Naldrett MJ, Palmer NA, Koch KG, Pingault L, Bradshaw JD, Twigg P, Heng-Moss TM, Louis J, Sarath G. Greenbug (Schizaphis graminum) herbivory significantly impacts protein and phosphorylation abundance in switchgrass (Panicum virgatum). Sci Rep. 2020 Sep 9;10(1):14842. PubMed PMID: 32908168.

Lou X, Xu H, Hanna M, Yuan L. Identification and quantification of free, esterified, glycosylated and insoluble-bound phenolic compounds in hawthorn berry fruit (Crataegus pinnatifida) and antioxidant activity evaluation. LWT. 2020 Aug;130:109643. Link to Article.

Guha S, Paul C, Alvarez S, Mine Y, Majumder K. Dietary γ-glutamyl valine ameliorates TNF-α-induced vascular inflammation via endothelial calcium-sensing receptors. J Agric Food Chem. 2020 Aug 26;68(34):9139-9149. PubMed PMID: 32786865.

Naumann TA, Naldrett MJ, Prince NPJ. Kilbournase, a protease-associated domain subtilase secreted by the fungal corn pathogen Stenocarpella maydis. Fungal Genet Biol. 2020 Aug;141:103399. PubMed PMID: 32387407.

Edwards RL, Heueck I, Lee SG, Shah IT, Miller JJ, Jezewski AJ, Mikati MO, Wang X, Brothers RC, Heidel KM, Osbourn DM, Burnham CAD, Alvarez S, Fritz SA, Dowd CS, Jez JM, Odom John AR. Potent, specific MEPicides for treatment of zoonotic staphylococci. PLoS Pathog. 2020 Jun 4;16(6):e1007806. PubMed PMID: 32497104.

Rahman H, Rudrow A, Carneglia J, Joly SP, Nicotera D, Naldrett MJ, Choy J, Ambudkar SV, Golin J. Nonsynonymous Mutations in Linker-2 of the Pdr5 Multidrug Transporter Identify a New RNA Stability Element. G3 (Bethesda). ). 2020 Jan 7;10(1):357-369. PubMed PMID: 31757931.

2019

Holland CK, Westfall CS, Schaffer JE, De Santiago A, Zubieta C, Alvarez S, Jez JM. Brassicaceae-specific Gretchen Hagen 3 acyl acid amido synthetases conjugate amino acids to chorismate, a precursor of aromatic amino acids and salicylic acid. J Biol Chem. 2019 Nov 8;294:16855-16864. PubMed PMID: 31575658.

Obasa K, Adesemoye A, Obasa R, Moraga-Amador D, Shinogle H, Alvarez S, Kelley K. Endohyphal bacteria associated with virulence, increased expression of fumonisin biosynthetic genes, and production of fumonisin and macroconidia in Fusarium fujikuroi W343. Plant Path. 2019 Oct 12: 69(1). Link to Article.

Lagundžin D, Hu WF, Law HCH, Krieger KL, Qiao F, Clement EJ, Drincic AT, Nedić O, Naldrett MJ, Alvarez S, Woods NT. Delineating the role of FANCA in glucose-stimulated insulin secretion in β cells through its protein interactome. PLoS One. 2019 Aug 28;14(8):e0220568. PubMed PMID: 31461451.

Hankore ED, Zhang L, Chen Y, Liu K, Niu W, Guo J. Genetic Incorporation of Noncanonical Amino Acids Using Two Mutually Orthogonal Quadruplet Codons. ACS Synth Biol. 2019 May 17;8(5):1168-1174. PubMed PMID: 30995842.

Graham LC, Naldrett MJ, Kohama SG, Smith C, Lamont DJ, McColl BW, Gillingwater TH, Skehel P, Urbanski HF, Wishart TM. Regional Molecular Mapping of Primate Synapses during Normal Healthy Aging. Cell Rep. 2019 Apr 23;27(4):1018-1026.e4. PubMed PMID: 31018120.

Varsani S, Grover S, Zhou S, Koch KG, Huang PC, Kolomiets MV, Williams WP, Heng-Moss T, Sarath G, Luthe DS, Jander G, Louis J. 12-Oxo-Phytodienoic Acid Acts as a Regulator of Maize Defense against Corn Leaf Aphid. Plant Physiol. 2019 Apr;179(4):1402-1415. PubMed PMID: 30643012.

Graybosch r, Bai G, Amand PS, Sarath G. Persistence of rye (Secale cereale L.) chromosone arm 1RS in wheat (Triticum aestivum L.) breeding programs of the Great Plains of North America. Gen Res Crop Evol. 2019 Apr 1;66 (4):941-950. Link to Article.

Kim WS, Krishnan HB. Impact of co-expression of maize 11 and 18 kDa δ-zeins and 27 kDa γ-zein in transgenic soybeans on protein body structure and sulfur amino acid content. Plant Sci. 2019 Mar;280:340-347. PubMed PMID: 30824013.

Shihabudeen Haider Ali MS, Cheng X, Moran M, Haemmig S, Naldrett MJ, Alvarez S, Feinberg MW, Sun X. LncRNA Meg3 protects endothelial function by regulating the DNA damage response. Nucleic Acids Res. 2019 Feb 20;47(3):1505-1522. PubMed PMID: 30476192.

Zapf RL, Wiemels RE, Keogh RA, Holzschu DL, Howell KM, Trzeciak E, Caillet AR, King KA, Selhorst SA, Naldrett MJ, Bose JL, Carroll RK. The Small RNA Teg41 Regulates Expression of the Alpha Phenol-Soluble Modulins and Is Required for Virulence in Staphylococcus aureus. mBio. 2019 Feb 5;10(1). PubMed PMID: 30723124.

Shah SB, Parmiter D, Constantine C, Elizalde P, Naldrett M, Karpova TS, Choy JS. Glucose Signaling Is Connected to Chromosome Segregation Through Protein Kinase A Phosphorylation of the Dam1 Kinetochore Subunit in Saccharomyces cerevisiae. Genetics. 2019 Feb;211(2):531-547. PubMed PMID: 30546002.

Pan M, Li M, Li L, Song Y, Hou L, Zhao J, Shen B. Identification of Novel Dense-Granule Proteins in Toxoplasma gondii by Two Proximity-Based Biotinylation Approaches. J Proteome Res. 2019 Jan 4;18(1):319-330. PubMed PMID: 30362762.

Palmer NA, Basu S, Heng-Moss T, Bradshaw JD, Sarath G, Louis J. Fall armyworm (Spodoptera frugiperda Smith) feeding elicits differential defense responses in upland and lowland switchgrass. PLoS One. 2019;14(6):e0218352. PubMed PMID: 31194847.

2018

Wang X, Edwards RL, Ball H, Johnson C, Haymond A, Girma M, Manikkam M, Brothers RC, McKay KT, Arnett SD, Osbourn DM, Alvarez S, Boshoff HI, Meyers MJ, Couch RD, Odom John AR, Dowd CS. MEPicides: α,β-Unsaturated Fosmidomycin Analogues as DXR Inhibitors against Malaria. J Med Chem. 2018 Oct 11;61(19):8847-8858. PubMed PMID: 30192536.

Chapman KM, Marchi-Werle L, Hunt TE, Heng-Moss TM, Louis J. Abscisic and Jasmonic Acids Contribute to Soybean Tolerance to the Soybean Aphid (Aphis glycines Matsumura). Sci Rep. 2018 Oct 11;8(1):15148. PubMed PMID: 30310120.

Beltrán J, Wamboldt Y, Sanchez R, LaBrant EW, Kundariya H, Virdi KS, Elowsky C, Mackenzie SA. Specialized Plastids Trigger Tissue-Specific Signaling for Systemic Stress Response in Plants. Plant Physiol. 2018 Oct;178(2):672-683. PubMed PMID: 30135097.

Garcia Tavares R, Lakshmanan P, Peiter E, O'Connell A, Caldana C, Vicentini R, Soares JS, Menossi M. ScGAI is a key regulator of culm development in sugarcane. J Exp Bot. 2018 Jul 18;69(16):3823-3837. PubMed PMID: 29767776.

Shang X, Chen Y, Wang N, Niu W, Guo J. Oxidation-induced generation of a mild electrophile for proximity-enhanced protein-protein crosslinking. Chem Commun (Camb). 2018 Apr 19;54(33):4172-4175. PubMed PMID: 29629441.

Long S, Brown KM, Sibley LD. CRISPR-mediated Tagging with BirA Allows Proximity Labeling in Toxoplasma gondii. Bio Protoc. 2018 Mar 20;8(6). PubMed PMID: 29644258.

Kesinger E, Liu J, Jensen A, Chia CP, Demers A, Moriyama H. Influenza D virus M2 protein exhibits ion channel activity in Xenopus laevis oocytes. PLoS One. 2018;13(6):e0199227. PubMed PMID: 29927982.

2017

Long S, Anthony B, Drewry LL, Sibley LD. A conserved ankyrin repeat-containing protein regulates conoid stability, motility and cell invasion in Toxoplasma gondii. Nat Commun. 2017 Dec 21;8(1):2236. PubMed PMID: 29269729.

Shang X, Lai R, Song X, Li H, Niu W, Guo J. An Improved Photoinduced Fluorogenic Alkene-Tetrazole Reaction for Protein Labeling. Bioconjug Chem. 2017 Nov 15;28(11):2859-2864. PubMed PMID: 29022697.

Liu K, Enns B, Evans B, Wang N, Shang X, Sittiwong W, Dussault PH, Guo J. A genetically encoded cyclobutene probe for labelling of live cells. Chem Commun (Camb). 2017 Sep 21;53(76):10604-10607. PubMed PMID: 28902227.

Ross KC, Andrews AJ, Marion CD, Yen TJ, Bhattacharjee V. Identification of the Serine Biosynthesis Pathway as a Critical Component of BRAF Inhibitor Resistance of Melanoma, Pancreatic, and Non-Small Cell Lung Cancer Cells. Mol Cancer Ther. 2017 Aug;16(8):1596-1609. PubMed PMID: 28500236.

Long S, Brown KM, Drewry LL, Anthony B, Phan IQH, Sibley LD. Calmodulin-like proteins localized to the conoid regulate motility and cell invasion by Toxoplasma gondii. PLoS Pathog. 2017 May;13(5):e1006379. PubMed PMID: 28475612.

Belayneh HD, Wehling RL, Reddy AK, Cahoon EB, Ciftci ON. Ethanol-modified supercritical carbon dioxide extraction of the bioactive lipid components of Camelina sativa seed. Seed. J Am Oil Chem Soc. 2017 Apr;94:855-865. Link to Article.

Belayneh HD, Wehling RL, Cahoon EB, Ciftci ON. Lipid composition and emulsifying properties of Camelina sativa seed lecithin. Food Chem. 2017 Aug;242:139-146. Link to Article.

Khasin M. Phytohormone signaling in Chlorella sorokiniana: perspectives on the evolution of plant cell-to-cell signaling Dissertations and Theses in Biological Sciences. 2017 Apr;95. Link to Article.

Gulati P, Li A, Holding D, Santra D, Zhang Y, Rose DJ. Heating Reduces Proso Millet Protein Digestibility via Formation of Hydrophobic Aggregates. J Agric Food Chem. 2017 Mar 8;65(9):1952-1959. PubMed PMID: 28198183.

Belayneh HD, Wehling RL, Cahoon EB, Ciftci ON. Effect of Extraction Method on the Oxidative Stability of Camelina Seed Oil Studied by Differential Scanning Calorimetry. J Food Sci. 2017 Mar;82(3):632-637. PubMed PMID: 28182838.

Shang X, Song X, Faller C, Lai R, Li H, Cerny R, Niu W, Guo J. Fluorogenic protein labeling using a genetically encoded unstrained alkene. Chem Sci. 2017 Feb 1;8(2):1141-1145. PubMed PMID: 28451254.

Deniz Ciftci, PhD Thesis: Subcritical Water-Assisted Fractionation of Lupin Hull for Production of Cellulose Nanofiber Hydrogels and Aerogels. 2017. Link to Article.

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